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SVN and prefabsconflicts

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Hi, I have been using svn for 2 weeks for unity and there is something I don't understand. Sometimes you make changes to the scene, etc... that produce modifications on the meta file of a prefab and the prefab itself. How do you handle this situation? I can resolve meta file conflicts but what about the binary prefab file? I can't merge changes with the repository :/. Sure I'm missing something, could anyone comment about it? Thanks in advance.

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